New Post: Deploy services to two different sites

I'm trying to help someone set up a deployment that involves two web services. They want one service to go in the default web site and the other to go in a different site. Is there a way to this with the built in functionality of BTDF?

I understand using IISMetabasePath to change the target website, but that changes it for everything. Is there a way to use one IISMetabasePath for one service and a different one for a second service in the same BTDF project?

Thanks